1,273 search results for “computational biology” in the Public website
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How quantum is your quantum computer?
Can you prove whether a large quantum system truly behaves according to the weird and wonderful rules of quantum mechanics — or if it just looks like it does? In a groundbreaking study, physicists from Leiden, Beijing en Hangzhou found the answer to this question.
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The hunt for the best computer language
Our language is adapted to the context in which we humans communicate. But computers ‘think’ differently. What would a language be like whose structure was optimally adjusted for use by humans and machines? Tessa Verhoef is trying to find the answer.
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The hunt for the best computer language
Our language is adapted to the context in which we humans communicate. But computers ‘think’ differently. What is the optimal form of a language for human-machine communication? Tessa Verhoef is trying to find the answer.
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Towards an effective biodiversity conservation and governance in the Pontocaspian region
Freshwater and brackish water ecosystems are arguably the most vulnerable ecosystems on earth, due to concentrated human developments in and around them. The Pontocaspian (PC) region located at the border of Europe and Asia contains a variety of brackish water ecosystems and unique inhabitants, known…
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Teacher knowledge and lesson design
The studies reported in this thesis were situated in the context of an innovation of Dutch secondary school biology curricula. As in any innovation, the practical knowledge of teachers determine the outcomes through the decisions they make while planning and teaching their lessons. The aim of the studies…
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Aquatic eDNA: Beyond Species Presence
As a non-invasive genetic method, eDNA based approaches have become an important component of ecologists' and environmental managers' toolkits for biomonitoring in conservation and an increasingly important source of ecological knowledge.
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Roy de KleijnFaculty of Social and Behavioural Sciences
kleijnrde@fsw.leidenuniv.nl | 071 5273915
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Archaeology thanks to computer-based research
A mix of data research, artificial intelligence and archaeology led to lively discussions on 31 January. On that day the unique event 'AI & Data Science @ Archaeology' took place in which the Data Science Research Programme (DSRP), SAILS and the Faculty of Archaeology joined forces.
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Felix Frohnertf.frohnert@liacs.leidenuniv.nl | 071 5272727
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Dheeraj Suryakarid.k.suryakari@liacs.leidenuniv.nl | 071 5272727
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Flor Miriam Plaza del Arcof.m.plaza.del.arco@liacs.leidenuniv.nl | 071 5272727
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PRIORITY: Prioritising novel genomic and chemical space via federated learning and preclinical development
There are millions of gene clusters that encode the biosynthesis of bioactive natural products, with the vast majority yet unknown. How can we prioritize them to discover new chemical space for antibiotics? For this we will set up a pipeline based on federated learning (AI), synthetic biology and bioactivity…
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LEELIS Conference on future of computer chips
A collaboration of physicists and chemists organized the LEELIS conference on new computer chip technology in Amsterdam on 10-11 November. Leiden physicist Joost Frenken is director of the organizing institute ARCNL.
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Multi-dimensional feature and data mining
In this thesis we explore machine and deep learning approaches that address keychallenges in high dimensional problem areas and also in improving accuracy in wellknown problems. In high dimensional contexts, we have focused on computational fluid dynamics (CFD) simulations.
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Systems diagnosis of chronic diseases, explored by metabolomics and ultra-weak photon emission
Promotor: J. van der Greef; Co-promotor: E. van Wijk, M. Wang
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Teachers’ practical knowledge and lesson design in the context of innovation
This project is situated within the context of an innovation of the biology curriculum in Dutch secondary schools. The main purposes are (1) to clarify the relation between teachers’ practical knowledge and the decisions they make when planning and implementing their lessons and (2) to develop a professional…
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Topology and Geometry in Chiral Liquids
We study the interplay of topology and geometry with chirality for several passive and active systems, employing both analytical and numerical methods.
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Computer Science in Leiden offers highest quality education
The Keuzegids Universiteiten 2018 has labelled the master’s programme in Computer Science as a “Topopleiding”, because it fulfils the highest standards. The Leiden programme ranks highest on the list of Computer Science programmes in the Netherlands.
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Mortality and HyperImage: Visual analytics techniques for biomarker discovery in massive 3D-omics datasets
Over the past decade, several novel types of spatially resolved
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Data structures for quantum circuit verification and how to compare them
Quantum computers are a proposed fundamentally new type of computer. They aim to perform some computations much faster than previously possible by exploiting phenomena at the quantum scale, called superposition and entanglement.
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LIACS part of European consortium to boost industrial quantum computing
The Leiden Institute of Advanced Computer Science (LIACS) is a proud member of the NExt ApplicationS of Quantum Computing (NEASQC) consortium, which recently received an ERC H2020 grant to stimulate the state-of-the-art in industrial quantum computing. LIACS contributes research and development of new…
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Rob van Nieuwpoort new professor of Efficient Computing and eScience
As of 1 October Rob van Nieuwpoort is the new professor of Efficient Computing and eScience at the Leiden Institute of Advanced Computer Science (LIACS). Van Nieuwpoort brings with him a wealth of expertise: he is an expert in eScience, high performace computing and advanced algorithms.
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Strategies for braiding and ground state preparation in digital quantum hardware
With the help of quantum mechanics, digital quantum hardware may be able to tackle some of the problems that are too difficult for ordinary computers. But despite these expectations and the ongoing effort of the research community, reliable quantum computers are not yet realized in a lab setting.
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Archaeology thanks to computer-based research
A mix of data research, artificial intelligence and archaeology led to lively discussions on 31 January. On that day the unique event 'AI & Data Science @ Archaeology' took place in which the Data Science Research Programme (DSRP), SAILS and the Faculty of Archaeology joined forces.
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A computer made of floppy rubber
A piece of corrugated rubber can function as a simple computer, displaying memory and displaying the ability to count to two. Leiden physicists describe the computing rubber in the journal PNAS. ‘Simple materials can process information, and we want to find the principles behind that.’
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Orbiting black holes explained with super computer
Two black holes, in close orbit around each other. Have they slowly drifted together, or did they emerge from two orbiting stars? Together with to colleagues form Amsterdam, Leiden astronomer Simon Portegies Zwart calculated that the second scenario is rather likely.
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Master Computer Science in Leiden nr.1 according to Elsevier
Master Computer Science in Leiden nr.1 according to Elsevier
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‘The first quantum computer will fill a sports hall’
The worldwide race to the quantum computer is in full swing. This computer can bring about a breakthrough in discovering medicines and new materials. Leiden researchers, together with the TU Delft, are taking part in the race. There is now a dossier online about their work.
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On the optimization of imaging pipelines
In this thesis, topics relating to the optimization of high-throughput pipelines used for imaging are discussed. In particular, different levels of implementation, i.e., conceptual, software, and hardware, are discussed and the thesis outlines how advances on each level need to be made to make gains…
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Quantum computing pioneer Seth Lloyd is the 2019 Lorentz Professor
American physicist and quantum computing pioneer Seth Lloyd is the 65th Lorentz professor. He will deliver the Ehrenfest lecture on 5 June, and several more lectures on quantum computing on 11, 18 and 25 June.
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Computer Science: half in Beijing and half in Leiden
Leiden University and the Beijing Institute of Technology will be collaborating in the area of computer science teaching and research. One of the first outcomes of this collaboration will be a joint four-year bachelor's programme. Willem te Beest, Vice-President of the Executive Board, and Professor…
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Digital Transformation: how do children perceive computer science?
Contribute to shaping the content and methods of future computer science education. That is what researchers hope to achieve with the Digital Transformation Research project. The Swiss National Science Foundation awarded 544,000 euros to this four-year project in December. The project will map the ideas…
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Computer science research in Leiden of major relevance to society
An international committee has assessed computer science research at all Dutch universities in the period 2009-2014. For its computer science research, Leiden was awarded the ‘highest’ mark (1) for relevance to society.
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Student project Computer Science for Volvo Ocean Race
Seven bachelor students in Computer Science at Leiden University are participating in a research project on big data and event management. Their work should eventually result in a system that can be applied at the finish of the Volvo Ocean Race in The Hague in June next year.
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Verifying the correctness of mathematical theorems with a computer
How correct are mathematical theorems? And is all the theory around them correct? To find out, mathematics student Dominique Lawson converted a mathematical theorem into computer language. ‘This allows a computer to understand the theorem and check whether the proof behind it is entirely correct.’ The…
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Functions of P38 and ERK kinases in zebrafish early development
Promotor: Prof.dr. H.P. Spaink Co-promotor: Dr. B.E. Snaar
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Caitlin Blackc.e.black@cml.leidenuniv.nl | 071 5272727
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Vincent Merckxmerckx@nhn.leidenuniv.nl | 071 5273570
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Algorithm selection and configuration for Noisy Intermediate Scale Quantum methods for industrial applications
Quantum hardware comes with a different computing paradigm and new ways to tackle applications. Much effort has to be put into understanding how to leverage this technology to give real-world advantages in areas of interest for industries such as combinatorial optimization or machine learning.
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Quantum machine learning: on the design, trainability and noise-robustness of near-term algorithms
This thesis addresses questions on effectively using variational quantum circuits for machine learning tasks.
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Computer scientists from Leiden and Eindhoven optimise building designs
The design process of new buildings is extremely complex due to strict requirements. Computer models are used to create the designs. Scientists from LIACS developed advanced algorithms that help their colleagues at Eindhoven University of Technology to optimise these models.
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Model-assisted robust optimization for continuous black-box problems
Uncertainty and noise are frequently-encountered obstacles in real-world applications of numerical optimization. The practice of optimization that deals with uncertainties and noise is commonly referred to as robust optimization.
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Three Leiden Science projects receive computing time on national supercomputers
A night sky of more than 40 petabytes in size, simulating young star clusters and understanding how the body inhibits viruses: three Leiden projects have received computing time on one of the national computer systems.
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Felienne Hermans explains why you should talk to your computer
Why should you talk to your computer? When children start learning how to read, they do so by using their voice and speaking the words out loud. In this lecture for the University of the Netherlands, Felienne Hermans (Leiden University) explains how speaking a computer code out loud can help children…
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Zhen Xuz.xu@liacs.leidenuniv.nl | 071 5272727
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Qianpu Chenq.chen.15@liacs.leidenuniv.nl | 071 5272727
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Jens van Bijsterveldj.van.bijsterveld@liacs.leidenuniv.nl | 071 5272727
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Computer scientist Frank Takes Teacher of the Year
Students of the Science Faculty of Leiden University have chosen Frank Takes, researcher and teacher at the Leiden Institute of Advanced Computer Science, to be the Teacher of the Year. Impressively enough, Takes also became the runner up Discoverer of the Year.
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Han de Windej.h.de.winde@biology.leidenuniv.nl | 071 5271036
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The tension between nature conservation and economic valuation of ecosystem services
Promotores: G.R. de Snoo, W.T. de Groot, Co-promotor: C.J.M. Musters