1,273 search results for “computational biology” in the Public website
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Simon Portegies Zwartspz@strw.leidenuniv.nl | 071 5278429
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Simulating the prehistoric use of fire through computer models
Archaeologists often use the percentages of heat-affected stone or bone artifacts found at archaeological sites as a way to determine how frequently fire was used by the inhabitants. Andrew Sorensen and Fulco Scherjon have come up with a computer model called 'fiReproxies' to simulate how fires used…
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Article on Affective Computing by Andreas Häuselmann published in IDPL
Affective Computing (AC and sometimes called ‘Emotional AI’) provides opportunities to automatically process emotional data. However, is EU data protection law fit for purpose when it is applied to such AC approaches?
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Inaugural lecture: Data of Value
By comparing individual health data with population data, doctors can provide personalized health advice and patients can learn from each other's experiences. Wessel Kraaij, professor of Applied Data Analytics shows how personal data can have predictive value.
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Clavis Aurea? Structure-enabled approaches of identifying and optimizing GPCR ligands
Promotores: A.P. IJzerman, H.W.T. van Vlijmen
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Smart programming for the quantum computer that does not exist yet
Designing innovative algorithms, thinking outside the box, and brainstorming over coffee with his colleagues — this is what physicist Stefano Polla enjoys most. His success shines through in his nomination for the C.J. Kok Jury Award 2024 for PhD thesis of the Year.
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Erik van Kampen publishes in the Journal of Leukocyte Biology: The effects of poor eating habits persist even after diet
New research published in the Journal of Leukocyte Biology suggests that these changes to the behavior of the immune system are persistent and can continue even after diet is improvedAlmost everyone knows that improving your eating habits will most likely improve your health. What most people may not…
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New Foundations for Separation Logic
The research presented in this thesis concerns one of the most important questions in software engineering of our time: how can we make sure that software is free from memory safety bugs?
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'I have always worked for a better world. Here at Biology we do the same'
The new institute manager of the IBL studied biology for six months, but went in a completely different direction: development cooperation and the financial sector. Three decades later, Resi Janssen is making a radical career switch. Or isn’t she? 'In ten years’ time I want IBL to be in a new, sustainable…
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Computer Science on place 51 in QS World Universities Ranking 2011
Computer Science on place 51 in QS World Universities Ranking 2011
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Stress-induced protein dynamic and growth arrest in C. elegans during development
During post-embryonic development into adults, animals face an environment that fluctuates constantly. For example, in nutrient availability, temperature, and osmolarity (e.g., salt concentration).
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Thomas Bäck and Hao Wang new Editors in chief of the Evolutionary Computation Journal
LIACS scholars Thomas Bäck and Hao Wang will be the new Editors-in-Chief of the Evolutionary Computation Journal from November 1. Published by MIT Press since its foundation in 1993, the journal stands as a keystone in the field, providing a global platform for researchers exploring the workings of…
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Photoinduced processes in dye-sensitized photoanodes under the spotlight: a multiscale in silico investigation
With increasing carbon dioxide levels in the atmosphere and their detrimental effect on the global climate, modern society needs to push for more renewable energy sources. Storing widely accessible and abundant solar energy in chemical bonds in the form of molecular fuel via artificial photosynthesis…
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Efficient constraint multi-objective optimization with applications in ship design
Constraint multi-objective optimization with a limited budget for function evaluations is challenging. This thesis tackles this problem by proposing new optimization algorithms. These algorithms are applied on holistic ship design problems. This helps naval architects balance objectives like cost, efficiency,…
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Computer program AlphaStar reaches professional level in video game StarCraft II
For the first time, a computer can compete with the very best human players in StarCraft II, a video game played by tens of thousands at a professional level and by millions just for fun. Mike Preuss, university lecturer at the Leiden Institute of Advanced Computer Science (LIACS) responds to the achievement…
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Mechanistic modelling of drug target binding kinetics as determinant of the time course of drug action in vivo
Drug-target binding kinetics determine the time course of the central event in pharmacotherapy: Drug-target interaction.
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Jaap van den Herik in Universiteit van Vlaanderen podcast on computers in the courtroom
Can a computer give just as good a judgment as a judge? Professor emeritus Law and IT believes it can and talks about using computers in the courtroom in a podcast of the Universiteit van Vlaanderen.
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Noisy brains, noisy choices? Exploring age-related changes in neural circuits for decision-making
Brain activity changes as people age, which can lead to cognitive decline. By measuring and comparing brain data from mice and humans, the researcher will investigate how the brain’s noise levels change with age and affect choice behavior.
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Arend-Jan Quista.quist@liacs.leidenuniv.nl | 071 5272727
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How the rise of AI is creating new opportunities for computational linguists
With the rise of AI, interest in computational linguistics and language models has taken flight. But machines are far from being able to go it alone. In her inaugural lecture, Professor Carole Tiberius will stress the importance of research on word combinations. ‘We know a great deal but there is a…
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Discrete tomography for integer-valued functions
Promotor: S.J. Edixhoven, Co-promotor: K.J. Batenburg
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eLaw publishes article in Computer Law & Security Review
In healthcare, gender and sex considerations are crucial because they affect individuals' health and disease differences. Yet, most algorithms deployed in the healthcare context lack close consideration of these aspects and do not account for bias detection. In their latest paper, Eduard Fosch-Villaronga,…
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This is what you want to know about the new directors of education Biology as a student
From 1 October onwards, Dennis Claessen and Marcel Schaaf will be the new directors of education of Biology. They will replace Han de Winde. Schaaf will be responsible for the bachelor, while Claessen will mainly focus on the master tracks of Biology. We gave students and the education office the change…
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Hora est through a computer speaker: Leiden’s first fully online PhD defence
Samineh Bagheri is the first PhD candidate to defend her thesis fully remotely.
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eLaw presents at the ACM Symposium on Computer Science and Law 2024
On 13 March 2024, Carlotta Rigotti, postdoc researcher at eLaw, and Alexandre Puttick, postdoc researcher at Bern University of Applied Sciences, remotely presented the working paper 'Towards mitigating diversity bias of AI in recruitment and selection via value sensitive design' at the ACM Symposium…
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Teaching
At Molecular Physiology we teach the following courses within the Leiden Institute of Chemistry's Chemistry and Life Science and Technology programmes.
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Madeline Kavanaghm.e.kavanagh@lic.leidenuniv.nl | 071 5272727
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Emily Strangee.f.strange@cml.leidenuniv.nl | 071 5272727
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Martijne Kannekensm.p.e.kannekens@cml.leidenuniv.nl | 071 5272727
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Leiden Law Cast #7: Law and computers with Professor Jaap van den Herik
Leiden Law Cast is a podcast made by Leiden Law School, Leiden University, for everyone who wants to learn more about current legal issues.
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Large Time Behaviour of Neutral Delay Systems
Promotor: S.M. Verduyn Lunel
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Leiden Law Cast: Law and computers with Professor Jaap van den Herik
Leiden Law Cast is a podcast made by Leiden Law School, Leiden University, for everyone who wants to learn more about current legal issues.
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DNA expressions - A formal notation for DNA
Promotores: J.N. Kok, H.J. Hoogeboom
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Changing meaning of the rule of law
This article explores how the meaning of the rule of law has evolved over the past century in UK and US parliamentary speeches, focusing on procedural (thin) and substantive (thick) conceptualisations.
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Systems diagnosis in chronic disease: prediction and evaluation
Promotor: J. van der Greef, T. Hankemeier; Co-promotor: H.A. van Wietmarschen
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Metabolic signatures in nutrition and health: short-term diet response, sexual dimorphism and hormone chronobiology
The power of personalized nutrition lies in being able to conduct clinical research on healthy people while capturing metabolic markers sensitive to the impact of environmental and metabolic stressors (e.g. diet, changing sex hormones and the menstrual cycle).
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Chemical Tools to Illuminate N-acylphosphatidylethanolamine Biosynthesis
This thesis describes the development and optimization of the first molecular tools to study the enzyme PLA2G4E.
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Chemical tools to study lipid signaling
Synthesis and application of chemical biology tools to study immunomodulatory signaling lipids.
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Evolutionary diversification and historical biogeography of Orchidaceae in Central America with emphasis on Costa Rica and Panama
In this thesis, I targeted the orchid genus Lepanthes, one of the six genera of angiosperms that surpasses 1,000 species in the Neotropics, as a study model to investigate the evolutionary processes that promoted species diversifications.
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MOOC ‘Evolution Today’
Evolution is all around you every day. This is the message of a Massive Open Online Course (MOOC) of Leiden University and Naturalis that is offered free of charge to anyone interested.
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Gianclaudio Malgieri appointed as Associate Editor of Computer Law & Security Review
Gianclaudio Malgieri, after having served as an Editorial Board Member of Computer Law & Security Review, Elsevier (CLSR) in the last three years, has now been appointed as Associate Editor of that review.
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Leiden University and Naturalis join forces to launch new ‘Evolution Today’ MOOC
Evolution is all around you every day. This is the message of the new Massive Open Online Course (MOOC) of Leiden University and Naturalis that begins on September 19.
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Key publications
Key publications of the Computational Drug Discovery group
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Biology student Sander van Zon: ‘We can still learn so much more about lichens’
Lichens enthusiast Sander van Zon was eager to use his knowledge for his internship. He wrote an excellent thesis on lichens’ biodiversity in the city, of which his first scientific publication will appear soon. With it, he is nominated for the Leiden Science Young Talent Award 2022.
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MARBLES - Marine Biodiversity as Sustainable Resource of Disease-Suppressive Microbes and Bioprotectants for Aquaculture and Crop Diseases
To explore the potential of marine microorganisms as producers of novel antimicrobial agents and as bioprotectants in aqua- and agriculture, using an integrative, ecology-based strategy for bioprospecting.
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From pixels to patterns: AI-driven image analysis in multiple domains
This thesis investigates the application of deep learning techniques in image analysis across various domains, focusing on four main themes: feature extraction, classification, segmentation, and integration, demonstrating the transformative potential of these technologies.
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Illuminating N-acylethanolamine biosynthesis with new chemical tools
In this thesis, the discovery and optimization is described of chemical tools to study the N-acylethanolamine (NAE) biosynthetic pathway.
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Proteins in harmony: Tuning selectivity in early drug discovery
This thesis describes the importance of being able to control the selectivity of potential drug candidates.
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Alina KarakantaFaculty of Humanities
a.karakanta@hum.leidenuniv.nl | 071 5272978
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The developing infant gut microbiota: mathematical predictions of the effects of oligosaccharides
A complex community of microbes develops in the infant gut shortly after birth. We call this community the infant gut microbiota. The microbiota influences the health of the infant, which makes the composition and function of the infant gut microbiota an important topic to study.